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Packages that use Frame | |
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org.obolibrary.obo2owl | |
org.obolibrary.oboformat.diff | |
org.obolibrary.oboformat.model | |
org.obolibrary.oboformat.parser | |
org.obolibrary.oboformat.writer |
Uses of Frame in org.obolibrary.obo2owl |
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Methods in org.obolibrary.obo2owl with parameters of type Frame | |
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protected boolean |
Owl2Obo.handleDuplicateClause(Frame frame,
Clause clause)
Handle a duplicate clause in a frame during translation. |
void |
Obo2Owl.trHeaderFrame(Frame headerFrame)
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org.semanticweb.owlapi.model.OWLClassExpression |
Obo2Owl.trTermFrame(Frame termFrame)
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org.semanticweb.owlapi.model.OWLNamedObject |
Obo2Owl.trTypedefFrame(Frame typedefFrame)
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Uses of Frame in org.obolibrary.oboformat.diff |
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Methods in org.obolibrary.oboformat.diff that return Frame | |
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Frame |
Diff.getFrame1()
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Frame |
Diff.getFrame2()
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Methods in org.obolibrary.oboformat.diff with parameters of type Frame | |
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void |
Diff.setFrame1(Frame frame1)
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void |
Diff.setFrame2(Frame frame2)
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Constructors in org.obolibrary.oboformat.diff with parameters of type Frame | |
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Diff(String ftype,
String type,
Frame f1,
Frame f2,
Clause c,
int n)
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Diff(String ftype,
String type,
Frame f1,
int n)
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Uses of Frame in org.obolibrary.oboformat.model |
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Fields in org.obolibrary.oboformat.model declared as Frame | |
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protected Frame |
OBODoc.headerFrame
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Fields in org.obolibrary.oboformat.model with type parameters of type Frame | |
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protected Collection<Frame> |
OBODoc.annotationFrames
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protected Map<String,Frame> |
OBODoc.instanceFrameMap
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protected Map<String,Frame> |
OBODoc.termFrameMap
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protected Map<String,Frame> |
OBODoc.typedefFrameMap
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Methods in org.obolibrary.oboformat.model that return Frame | |
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Frame |
OBODoc.getHeaderFrame()
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Frame |
OBODoc.getInstanceFrame(String id)
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Frame |
OBODoc.getTermFrame(String id)
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Frame |
OBODoc.getTermFrame(String id,
boolean followImport)
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Frame |
OBODoc.getTypedefFrame(String id)
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Frame |
OBODoc.getTypedefFrame(String id,
boolean followImports)
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Methods in org.obolibrary.oboformat.model that return types with arguments of type Frame | |
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Collection<Frame> |
OBODoc.getInstanceFrames()
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Collection<Frame> |
OBODoc.getTermFrames()
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Collection<Frame> |
OBODoc.getTypedefFrames()
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Methods in org.obolibrary.oboformat.model with parameters of type Frame | |
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void |
OBODoc.addFrame(Frame f)
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void |
OBODoc.addInstanceFrame(Frame f)
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void |
OBODoc.addTermFrame(Frame f)
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void |
OBODoc.addTypedefFrame(Frame f)
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void |
Frame.merge(Frame extFrame)
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void |
OBODoc.setHeaderFrame(Frame headerFrame)
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Constructors in org.obolibrary.oboformat.model with parameters of type Frame | |
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FrameStructureException(Frame frame,
String msg)
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OBOProfileUtil.UnrepairableProfileViolation(OBOProfileUtil.ProfileType pt,
Frame frame)
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Uses of Frame in org.obolibrary.oboformat.parser |
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Methods in org.obolibrary.oboformat.parser that return Frame | |
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protected Frame |
XrefExpander.Rule.getTargetFrame(String id)
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Methods in org.obolibrary.oboformat.parser with parameters of type Frame | |
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abstract void |
XrefExpander.Rule.expand(Frame sf,
String id,
String xref)
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void |
XrefExpander.EquivalenceExpansion.expand(Frame sf,
String id,
String xref)
|
void |
XrefExpander.HasSubClassExpansion.expand(Frame sf,
String id,
String xref)
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void |
XrefExpander.GenusDifferentiaExpansion.expand(Frame sf,
String id,
String xref)
|
void |
XrefExpander.ReverseGenusDifferentiaExpansion.expand(Frame sf,
String id,
String xref)
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void |
XrefExpander.IsaExpansion.expand(Frame sf,
String id,
String xref)
|
void |
XrefExpander.RelationshipExpansion.expand(Frame sf,
String id,
String xref)
|
protected void |
OBOFormatParser.parseHeaderClause(Frame h)
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protected boolean |
OBOFormatParser.parseHeaderClauseNl(Frame h)
header-clause ::= format-version-TVP | ... |
void |
OBOFormatParser.parseHeaderFrame(Frame h)
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protected void |
OBOFormatParser.parseIdLine(Frame f)
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protected void |
OBOFormatParser.parseTermFrameClauseEOL(Frame f)
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protected void |
OBOFormatParser.parseTypedefFrameClauseEOL(Frame f)
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Uses of Frame in org.obolibrary.oboformat.writer |
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Methods in org.obolibrary.oboformat.writer with parameters of type Frame | |
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void |
OBOFormatWriter.write(Frame frame,
BufferedWriter writer,
OBOFormatWriter.NameProvider nameProvider)
|
void |
OBOFormatWriter.writeHeader(Frame frame,
BufferedWriter writer,
OBOFormatWriter.NameProvider nameProvider)
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