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Packages that use OBODoc | |
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org.obolibrary.obo2owl | |
org.obolibrary.oboformat.diff | |
org.obolibrary.oboformat.model | |
org.obolibrary.oboformat.parser | |
org.obolibrary.oboformat.writer |
Uses of OBODoc in org.obolibrary.obo2owl |
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Methods in org.obolibrary.obo2owl that return OBODoc | |
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OBODoc |
Owl2Obo.convert(org.semanticweb.owlapi.model.OWLOntology ont)
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OBODoc |
Owl2Obo.getObodoc()
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OBODoc |
Obo2Owl.getObodoc()
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Methods in org.obolibrary.obo2owl with parameters of type OBODoc | |
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org.semanticweb.owlapi.model.OWLOntology |
Obo2Owl.convert(OBODoc obodoc)
Converts an OBO document to an OWL ontology |
org.semanticweb.owlapi.model.OWLOntology |
Obo2Owl.convert(OBODoc obodoc,
boolean useFreshManager)
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void |
Owl2Obo.setObodoc(OBODoc obodoc)
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void |
Obo2Owl.setObodoc(OBODoc obodoc)
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Uses of OBODoc in org.obolibrary.oboformat.diff |
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Methods in org.obolibrary.oboformat.diff with parameters of type OBODoc | |
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List<Diff> |
OBODocDiffer.getDiffs(OBODoc doc1,
OBODoc doc2)
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Uses of OBODoc in org.obolibrary.oboformat.model |
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Fields in org.obolibrary.oboformat.model with type parameters of type OBODoc | |
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protected Collection<OBODoc> |
OBODoc.importedOBODocs
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Methods in org.obolibrary.oboformat.model that return types with arguments of type OBODoc | |
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Collection<OBODoc> |
OBODoc.getImportedOBODocs()
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Methods in org.obolibrary.oboformat.model with parameters of type OBODoc | |
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void |
OBODoc.addImportedOBODoc(OBODoc doc)
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boolean |
OBOProfileUtil.enforce(OBODoc doc,
Set<OBOProfileUtil.ProfileType> profiles)
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void |
OBODoc.mergeContents(OBODoc extDoc)
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Method parameters in org.obolibrary.oboformat.model with type arguments of type OBODoc | |
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void |
OBODoc.setImportedOBODocs(Collection<OBODoc> importedOBODocs)
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Uses of OBODoc in org.obolibrary.oboformat.parser |
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Methods in org.obolibrary.oboformat.parser that return OBODoc | |
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OBODoc |
XrefExpander.getTargetDoc(String idSpace)
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OBODoc |
OBOFormatParser.parse(BufferedReader reader)
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OBODoc |
OBOFormatParser.parse(File file)
Parses a local file to an OBODoc |
OBODoc |
OBOFormatParser.parse(String fn)
Parses a local file or URL to an OBODoc |
OBODoc |
OBOFormatParser.parse(URL url)
Parses a remote URL to an OBODoc |
OBODoc |
OBOFormatParser.parseURL(String urlstr)
Parses a remote URL to an OBODoc |
Methods in org.obolibrary.oboformat.parser with parameters of type OBODoc | |
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List<String> |
OBOFormatParser.checkDanglingReferences(OBODoc doc)
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void |
OBOFormatParser.parseEntityFrame(OBODoc obodoc)
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void |
OBOFormatParser.parseOBODoc(OBODoc obodoc)
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void |
OBOFormatParser.parseTermFrame(OBODoc obodoc)
term-frame ::= nl* '[Term]' nl id-Tag Class-ID EOL { term-frame-clause EOL } |
void |
OBOFormatParser.parseTypedefFrame(OBODoc obodoc)
Typedef-frame ::= nl* '[Typedef]' nl id-Tag Class-ID EOL { Typedef-frame-clause EOL } |
Constructors in org.obolibrary.oboformat.parser with parameters of type OBODoc | |
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XrefExpander(OBODoc src)
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XrefExpander(OBODoc src,
OBODoc tgt)
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XrefExpander(OBODoc src,
String targetBase)
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Uses of OBODoc in org.obolibrary.oboformat.writer |
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Methods in org.obolibrary.oboformat.writer with parameters of type OBODoc | |
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void |
OBOFormatWriter.write(OBODoc doc,
BufferedWriter writer)
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void |
OBOFormatWriter.write(OBODoc doc,
BufferedWriter writer,
OBOFormatWriter.NameProvider nameProvider)
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void |
OBOFormatWriter.write(OBODoc doc,
String outFile)
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Constructors in org.obolibrary.oboformat.writer with parameters of type OBODoc | |
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OBOFormatWriter.OBODocNameProvider(OBODoc oboDoc)
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